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TGAAGGGATTGCTCAGATAGAGAATTTGTCCACACAAGACGCTCTCGGTCGGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgtggaaaattactttatttgtgttttatcgcgtgattttgcatttatgacataattttggtatgcttaatcttattctttgcag
species | Oryza sativa |
transcript | LOC_Os01g42850.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAAT TCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGGEST: gi|29640244|gb|CB645253.1|CB645253
genomic: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgt ... ttctttgcagTCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGG
EST: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAAT TCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGGEST: gi|25798441|gb|CA754402.1|CA754402
genomic: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgt ... ttctttgcagTCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGG
EST: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAAT TCAGATCATAATGGAGCACTGGATCEST: gi|29674599|gb|CB670874.1|CB670874
genomic: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgt ... ttctttgcagTCAGATCATAATGGAGCACTGGATC
EST: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAAT TCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGGEST: gi|29674597|gb|CB670872.1|CB670872
genomic: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgt ... ttctttgcagTCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGG
EST: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAAT TCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGG
genomic: GGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgt ... ttctttgcagTCAGATCATAATGGAGCACTGGATCAGCAGTCGGCAGTAATATTACCTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGGGATTGCTCAGATAGAGAATTTGTCCACACAAGACGCTCTCGGTCGGCAAAGATTGGGCTGCTGTTTCTGCAGTGATACTACTTCCCTTGTTAATgtataactgtggaaaattactttatttgtgttttatcgcgtgattttgcatttatgacataattttggtatgcttaatcttattctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG