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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACTGAACTTGTTGAGCATGTTCTTAATGACTGTGACATTGTTGGTAAAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgttaacagtctgtggtaattttggatgtaataatccccttacatcatttttgtcttgtgtgtag

Basic information

species Oryza sativa
transcript LOC_Os01g40340.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40340.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G149321_T01 (Zea mays), 5'ss of exon 4
AAGAACTGAACTTGTTGAGCATGTTCTTAATGACTGTGACATTGTTGGTAAAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgttaacagtctgtggtaattttggatgtaataat-----ccccttacatcatttttgtcttgtgtgtag-----------
|||| ||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||| | | || |   |||| || ||||| || ||||||| ||||||||||| | || |  ||||    |||||  |  | || |      ||   | | |  || || ||| ||||||             
AAGACCTGAAGTTGTTGAGCATGTTCTTCATGAATGTGATATTGTTGGTAAAATTCTTGTCTCAGAGAGGTTTTCATCCTTGTCGACTGAGTCTAATGGGgtaagttatcaatacactgtaactattttttactttatcacagagacctaatccctttttattttctggtgtgtcttctatgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679221|gb|CK067908.1|CK067908
EST:     GGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: GGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
EST: gi|29680806|gb|CB677081.1|CB677081
EST:     AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
EST: gi|29612947|gb|CB617960.1|CB617960
EST:     AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
EST: gi|88717309|gb|CI740819.1|CI740819
EST:     AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
EST: gi|88417264|gb|CI576338.1|CI576338
EST:     AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
EST: gi|58689270|gb|CK077957.1|CK077957
EST:     AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGG                         CCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT
genomic: AAATTCTTGCCGCGGAAAAACTTTCTTCTTTGTCAACAGAGTCTACTGGGgtaagttgtt ... ttgtgtgtagCCTACTATACCTTCAGATGGTAAATCGATTCCCAAAATTGGGAATATTGGT