1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggtacttctatataatatatgtgttgctacttgcttggcaacgcacaacaaataaaaatggttattttatcggctgaacaatttcttctcagatacataatactgcaaaatgttgaaattattaaggtgtgaaagtaaggctatggtcaattcaaatttcag
species | Oryza sativa |
transcript | LOC_Os01g32750.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|58693421|gb|CK082108.1|CK082108
genomic: CTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|27548087|gb|CA766146.2|CA766146
genomic: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: AACACGGCCTCTTTTGAGGAGNAATAAGAGAGTCGCGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|29614713|gb|CB619726.1|CB619726
genomic: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|25807149|gb|CA763110.1|CA763110
genomic: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: TCGTGACTAACAACCCAA TTAAACGGAAGTCTAGTCCAAATCTCTCCCCATCCCAGCCACCTCTGAAGAEST: gi|58682941|gb|CK071628.1|CK071628
genomic: TCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|27921330|gb|CB097138.1|CB097138
genomic: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: GGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGAEST: gi|29681489|gb|CB677764.1|CB677764
genomic: GGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
EST: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAA ATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
genomic: AACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggt ... caaatttcagATAAACGGAAGTCTAGTACAGATCTCTCCACATCCCAGCCACCTCTGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGCTTATATGATCGGCTCAAGTTGTTTCCTAATTTGCTTTCTCCATCAACACGGCCTCTTTTGAGGAGTAATAAGAGAGTCGTGACTAACAACCCAAgtaagttggtacttctatataatatatgtgttgctacttgcttggcaacgcacaacaaataaaaatggttattttatcggctgaacaatttcttctcagatacataatactgcaaaatgttgaaattattaaggtgtgaaagtaaggctatggtcaattcaaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA