Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaaggacttcatttgatttgtttgcgaaaagcagaaatgcattatatatcttgcttcatctcatggtaggactttccgttatctaaagaaaaatcttccgtctaacgataattctgctttacatgcactag

Basic information

species Oryza sativa
transcript LOC_Os01g25820.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577180|gb|CA999874.1|CA999874
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|58665614|gb|CK054300.1|CK054300
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|29679760|gb|CB676035.1|CB676035
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|29686947|gb|CB683222.1|CB683222
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|27577154|gb|CA999848.1|CA999848
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|58670791|gb|CK059477.1|CK059477
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|27554471|gb|CA998371.1|CA998371
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|163925582|gb|EG715403.1|EG715403
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGTACGAAAAAGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|3763131|gb|AU029883.1|AU029883
EST:     GGACGAAAAAGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
EST: gi|27576530|gb|CA999224.1|CA999224
EST:     GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAACGCAAG                         ATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA
genomic: GGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaagga ... catgcactagATTCCCAAAACTTTTGGTCGATGGACCGTATGGTGCACCGGCACAAGATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTTTCCAAGGGAATAACGGACGAAAAAGCAAGgtgcaaaggacttcatttgatttgtttgcgaaaagcagaaatgcattatatatcttgcttcatctcatggtaggactttccgttatctaaagaaaaatcttccgtctaacgataattctgctttacatgcactag

- - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG