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ATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAAGCCTGGGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggctttgaagtaaaatgtcttggatctccatttgaactgttggtcactttatcatagttgaaatgatcaaatgacagggttgcttgctacggtaaa...
species | Oryza sativa |
transcript | LOC_Os01g21820.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAG GGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGEST: gi|66928365|gb|CX115213.1|CX115213
genomic: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggcttt ... tgtatctcagGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
EST: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAG GGA-CAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGEST: gi|29676133|gb|CB672408.1|CB672408
genomic: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggcttt ... tgtatctcagGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
EST: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAG GGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGEST: gi|58655936|gb|CK044616.1|CK044616
genomic: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggcttt ... tgtatctcagGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
EST: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAG GGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAGEST: gi|58691936|gb|CK080623.1|CK080623
genomic: CATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggcttt ... tgtatctcagGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
EST: CCTACTCATGTGAGAAG GGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
genomic: CCTACTCATGTGAGAAGgtatggcttt ... tgtatctcagGGACCAACTCGTGATGAAGTAATTGCAAATCTGAGAAGTGCATTCATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTTAAAGAGTCTGTTGAAGTGGCTGTCAAAGCCTGGGGAGAAAAATCATTGACCGAGCTAGAAGCTGAAGAGCGGCTCTCCTACTCATGTGAGAAGgtatggctttgaagtaaaatgtcttggatctccatttgaactgttggtcactttatcatagttgaaatgatcaaatgacagggttgcttgctacggtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA