Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaattacactgtcatcaagaagcgggagctccatgttgttaggttctttgaccgtttgacgtttagcttctcgttatctgacccatcttgttgcattgcgtttttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g18630.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g18630.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G077233_T04 (Zea mays), 5'ss of exon 11
TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaattacac-tgtcatcaagaagcgggagctccatgttgttaggttctttgaccgtttgacgt---ttagcttctcgttatctgacccatcttgttg-cattgcgtttttgcag
||| ||||||||||||||||   ||| |||||| | |||||||| ||||| ||||| || ||||| || ||||| || || || ||||||||| |  |  | |  |||    |||  || | |  ||||   | |   ||  ||        |  |     | |      |  | |   | | |||||||   ||||  |         
TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTGgtacgctgaacatatatgtacataagtggcagtaa-tccacactctacagtctttgctttccctagcaagaatcaagcatgcaatgtgacatctatcttgtaaacattcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88466426|gb|CI529835.1|CI529835
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29631070|gb|CB636079.1|CB636079
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTTTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86873001|gb|CI326998.1|CI326998
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88251967|gb|CI350395.1|CI350395
EST:     GACGTGCCACCTCCACGCGGCCAACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: GACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29643124|gb|CB648131.1|CB648131
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86869677|gb|CI322163.1|CI322163
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88383194|gb|CI538222.1|CI538222
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|15853958|gb|BI806754.1|BI806754
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29631103|gb|CB636112.1|CB636112
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|87030736|gb|CI361950.1|CI361950
EST:     TCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: TCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86876454|gb|CI318429.1|CI318429
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|89195188|gb|CI051301.1|CI051301
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88993436|gb|CI257864.1|CI257864
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88844256|gb|CI005629.1|CI005629
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|89185110|gb|CI049656.1|CI049656
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86421289|gb|CI057278.1|CI057278
EST:     GTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: GTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86435830|gb|CI107063.1|CI107063
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86872026|gb|CI333187.1|CI333187
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29662754|gb|CB659029.1|CB659029
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86869822|gb|CI316550.1|CI316550
EST:     ATCAGCGGGTTCATGGCGTTCGACGTCCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88515803|gb|CI443457.1|CI443457
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|87022160|gb|CI259232.1|CI259232
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|427672|gb|D23806.1|D23806
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86825066|gb|CI358229.1|CI358229
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGTATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|58613285|gb|CK040997.1|CK040997
EST:     CGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGGTGCATACCACACTGTCTTCGACTTTGG
genomic: CGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|89198402|gb|CI007462.1|CI007462
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88252147|gb|CI350575.1|CI350575
EST:     TCAGCCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: TCAG-CGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86876456|gb|CI318430.1|CI318430
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86907659|gb|CI296618.1|CI296618
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86423128|gb|CI060701.1|CI060701
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|218493897|gb|FG949292.1|FG949292
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGGTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88985328|gb|CI002845.1|CI002845
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86841464|gb|CI336450.1|CI336450
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29665540|gb|CB661815.1|CB661815
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88250575|gb|CI348805.1|CI348805
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86886269|gb|CI335972.1|CI335972
EST:     TCAGCGGGTTCATGGCGGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: TCAGCGGGTTCATGGC-GTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29645988|gb|CB650995.1|CB650995
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88258468|gb|CI361054.1|CI361054
EST:     ATCAGCGGGTTCATGGCGTTCGACGGGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTT-G
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|87029011|gb|CI351314.1|CI351314
EST:     ATCAGCGGGTTCATGGCGTTCGACGTCCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86836859|gb|CI347447.1|CI347447
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86884877|gb|CI314453.1|CI314453
EST:     ATCAGC-GGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACCTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86430021|gb|CI082444.1|CI082444
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29664682|gb|CB660957.1|CB660957
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|87022142|gb|CI259214.1|CI259214
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88840846|gb|CI080300.1|CI080300
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86853703|gb|CI330554.1|CI330554
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88993443|gb|CI257871.1|CI257871
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29639119|gb|CB644128.1|CB644128
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|29683212|gb|CB679487.1|CB679487
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88264965|gb|CI368739.1|CI368739
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86872998|gb|CI326995.1|CI326995
EST:     ATCAGCGGGTTCAT-GCGTTCTACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88216732|gb|CI216581.1|CI216581
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86874941|gb|CI325397.1|CI325397
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|27578101|gb|CB000796.1|CB000796
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88257706|gb|CI360292.1|CI360292
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86872791|gb|CI317706.1|CI317706
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACCCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCAAACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|88270348|gb|CI385606.1|CI385606
EST:     GGCCCACTCTG                         GATTCTTGGACACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: GGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86416575|gb|CI030586.1|CI030586
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86864150|gb|CI334002.1|CI334002
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86828240|gb|CI276836.1|CI276836
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
EST: gi|86254951|gb|CI017071.1|CI017071
EST:     ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTG                         GATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG
genomic: ATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 73 (downstream exon)
Score: 59

TACGTAGTGAAGCTGGAGCAGCAAGGTCAAACTGTTTGCATCAGCGGGTTCATGGCGTTCGACGTGCCACCTCCACGCGGCCCACTCTGgtacacaaat ... gtttttgcagGATTCTTGGAGACGTGTTCATGGCTGCATACCACACTGTCTTCGACTTTGGCAAAAACAGGATTGGGTTCGCCGAGTCTGCTTGAATTGCTTGGCTAGGG




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