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TATACTTGTGAAAAGCATGGATTGGTCAAAACTTAAGCCGAATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatccttttgcaagctttttacttttagagccaatacttcctacttgctttatgttctttcactgaacccgaaggcaggaatttatgcacatcctagat...
species | Oryza sativa |
transcript | LOC_Os01g16170.3 |
intron # | 11 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|38481874|gb|CF965943.1|CF965943
genomic: ATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: GTTTAGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGATEST: gi|33684544|gb|CF312783.1|CF312783
genomic: GTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
EST: TCTACCGTGGCTTGTAGATGCTGGAGGATGTTGTTTTGCTTGATACTTTT ATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
genomic: TCTACCGTGGCTTGTAGATGCTGGAGGATGT-GTTTTGCTTGATACTTTTgtatcctttt ... tctatcacagATTATTCTTCAGTTTCTTTATTTCCATTATCGGAAGCGACACGTTCCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATACTTGTGAAAAGCATGGATTGGTCAAAACTTAAGCCGAATCTACCGTGGCTTGTAGATGCTGGAGGATGTGTTTTGCTTGATACTTTTgtatccttttgcaagctttttacttttagagccaatacttcctacttgctttatgttctttcactgaacccgaaggcaggaatttatgcacatcctagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG