1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAACGAGTACTTGGCTGATAGTTCACTTCTCTATGCCGAAGAGGCGGATGAAGAAGAAAAGAAGATAAAGTTTCAGGAACTCTATGAAAAGTACAAGCATgtgagtgtcctgtattcttttgaataccagctttttttttcctaatggttggaaaacagcttcagagttctgacccaatcgctcttgccaacattcag
species | Oryza sativa |
transcript | LOC_Os01g10140.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGAAGAAAAGAAGATAAAGTTTCAGGAACTCTATGAAAAGTACAAGCAT TTGCTCTACGGTGCATCTGAATTTGAAGAGACACCGAGGGACCTCGACGACEST: gi|9865090|gb|AU100840.1|AU100840
genomic: AAGAAGAAAAGAAGATAAAGTTTCAGGAACTCTATGAAAAGTACAAGCATgtgagtgtcc ... caacattcagTTGCTCTACGGTGCATCTGAATTTGAAGAGACACCGAGGGACCTCGACGAC
EST: AAGAAGAAAAGAAGNTAAAGTTTCA-GAACTCTATGAAAAGTACAAGCAT TTGCTCTNCGGTGCATCTGAATTTGAAGAGACACCGAGGGACCTCCGACGA
genomic: AAGAAGAAAAGAAGATAAAGTTTCAGGAACTCTATGAAAAGTACAAGCATgtgagtgtcc ... caacattcagTTGCTCTACGGTGCATCTGAATTTGAAGAGACACCGAGGGACCT-CGACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACGAGTACTTGGCTGATAGTTCACTTCTCTATGCCGAAGAGGCGGATGAAGAAGAAAAGAAGATAAAGTTTCAGGAACTCTATGAAAAGTACAAGCATgtgagtgtcctgtattcttttgaataccagctttttttttcctaatggttggaaaacagcttcagagttctgacccaatcgctcttgccaacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG