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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCATAACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaacaaatctctatcctactacatgtcatctcaagcacatgtatacctgatgagccatcattatacag

Basic information

species Oryza sativa
transcript LOC_Os01g07740.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681553|gb|CB677828.1|CB677828
EST:     AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: gi|163920524|gb|EG709580.1|EG709580
EST:     AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: gi|86437266|gb|CI118988.1|CI118988
EST:     AACAGCAACAGTGGCAATCAGTCTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: gi|163929260|gb|EG711021.1|EG711021
EST:     AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: gi|66913147|gb|CX099995.1|CX099995
EST:     AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: AACAGCAACAGTGGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
EST: gi|86437630|gb|CI119352.1|CI119352
EST:     GGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAG                         CTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA
genomic: GGCAATCAGTTTGGCGATACTTCTGGCTTCCAAACCAGgtacaaaaca ... cattatacagCTTTCATAACAGCAGCAGCAACAATCAAACCAGTGACAATCCAAGCTTTCA