1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGCCATGGAAAAGGAGATGGCGGCTTTGCGGTTGGAGAAAGAGCAGGATAACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGgtacttaatactgggaacaagatttacttttccttggttgagattactattaatttaattatgaaatgcagctaacgcacgtgagtatgtaatgtaatgtaactcag
species | Oryza sativa |
transcript | LOC_Os12g44340.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAG GACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACEST: gi|218486954|gb|FG945462.1|FG945462
genomic: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGgtacttaata ... tgtaactcagGACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAAC
EST: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAG GACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAACEST: gi|88845816|gb|CI084546.1|CI084546
genomic: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGgtacttaata ... tgtaactcagGACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAAC
EST: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAG GACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAAC
genomic: AACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGgtacttaata ... tgtaactcagGACATTGCCTCGGAGTGGTTCAGCACGCAATATGTGATGCAAGCGAGGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCATGGAAAAGGAGATGGCGGCTTTGCGGTTGGAGAAAGAGCAGGATAACAAAGCAAAAAGGTTTGGTAGTTCAAGTTCGCAGCTGCCACCTGGCAGgtacttaatactgggaacaagatttacttttccttggttgagattactattaatttaattatgaaatgcagctaacgcacgtgagtatgtaatgtaatgtaactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC