1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGAGATTTACACCAGAAATTTGATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaatttgctaaaagcaaatagtactaataattaagtggtggctagtggctactgataaacaatttagagtaaatttcacaaaactacagatact...
species | Oryza sativa |
transcript | LOC_Os12g42810.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAG GAGGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTEST: gi|25805812|gb|CA761773.1|CA761773
genomic: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaat ... ttttatgtagGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTT
EST: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAG GAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTEST: gi|88471116|gb|CI408387.1|CI408387
genomic: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaat ... ttttatgtagGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTT
EST: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAG GAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTTEST: gi|88903174|gb|CI088712.1|CI088712
genomic: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaat ... ttttatgtagGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTT
EST: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAG GAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTT
genomic: CTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaat ... ttttatgtagGAAGTGGCATCTACACCAGGCAGACGAGAGGCATTGAGCAATGCTGAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGATTTACACCAGAAATTTGATCGTTTCTTTTGTGGACTTGAGATGTCTGAGGGAGAGTTTGTAAGAGGAGTTGCACACCGTCTCCATTCCATGGAGgtcagtaaatttgctaaaagcaaatagtactaataattaagtggtggctagtggctactgataaacaatttagagtaaatttcacaaaactacagatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA