1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagctatttgagggttcccatgtattagaaccaattggcatactgtcatatgacacagttccatgcatgtctcattgctcacgcatctgaactccatactctaatttgcag
species | Oryza sativa |
transcript | LOC_Os12g41860.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58682524|gb|CK071211.1|CK071211
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58682326|gb|CK071013.1|CK071013
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58684992|gb|CK073679.1|CK073679
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: CTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAGAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58684320|gb|CK073007.1|CK073007
genomic: CTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCA-AAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58682325|gb|CK071012.1|CK071012
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTTEST: gi|58665252|gb|CK053938.1|CK053938
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
EST: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAG AGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
genomic: GCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagct ... taatttgcagAGGTTTCAATGATGCTGTTAGTGGATTTCCAGATGATGGGTGGTCTTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACATTAGGCAAATTGCGCATGAGTCAAGCGGTGAAATCCCCTACGGTGCTGGTCGCCAGCCTGCTGTTTTCAGGACCTTCAGTCAAAGGCTCAGCAGgtctgtagctatttgagggttcccatgtattagaaccaattggcatactgtcatatgacacagttccatgcatgtctcattgctcacgcatctgaactccatactctaatttgcag
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