Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTAGCTGCACTATATGAAGATAGGATCCTTCTGATTTTTGGAGGCCACTCAAAATCCAAGACCCTGAATGATCTGTTTTCTTTGGATTTTGAGACAgtaagttgtatgagatttcttgtatctcacaaagtattgctaaagtagattttccttacatagttatcttcttgttag

Basic information

species Oryza sativa
transcript LOC_Os12g35350.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g35350.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G174830_T01 (Zea mays), 5'ss of exon 10
TCATGTAGCTGCACTATATGAAGATAGGATCCTTCTGATTTTTGGAGGCCACTCAAAATCCAAGACCCTGAATGATCTGTTTTCTTTGGATTTTGAGACAgtaagttgtatgagatttcttgt--------atctcacaaagtattgc-taaagtagattttccttacatagttatcttcttgttag
|||| | ||| |||| ||||| |||||| ||||| | ||||||||||||||||||||||| ||||| || |||||  ||| |||||||||||| || |||||||||| | || |  | |||||        | ||||  |  | |||| |  || ||  |   | |  |  ||| ||||| ||  ||
TCATATTGCTACACTGTATGATGATAGGGTCCTTTTAATTTTTGGAGGCCACTCAAAATCTAAGACACTTAATGACTTGTATTCTTTGGATTTCGATACAgtaagtt-tgtgggcatccttgtttcagtatacctcagtacattttgcatttagcaggctactcat-tagtgttttcttcctgacag