1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGAAGCATTGTTTCAGACCCATGAAAACTTGGAGCATCTTGCTATGATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgctgtccttgatccgtctcattgtcagtaagcattcacagcattggggattagtaggtattgtgtgctcatttgttgcttgtatgtag
species | Oryza sativa |
transcript | LOC_Os12g27520.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86250790|gb|CI007653.1|CI007653
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|29632958|gb|CB637967.1|CB637967
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86421246|gb|CI057235.1|CI057235
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88849216|gb|CI087738.1|CI087738
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|29670716|gb|CB666991.1|CB666991
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88333223|gb|CI641066.1|CI641066
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86494975|gb|CI137608.1|CI137608
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: TATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88981415|gb|CI027033.1|CI027033
genomic: TATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|13895818|gb|C23622.2|C23622
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: TGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88226612|gb|CI226528.1|CI226528
genomic: TGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCT-CAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88841022|gb|CI000984.1|CI000984
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86416061|gb|CI030072.1|CI030072
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88216486|gb|CI216335.1|CI216335
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: TGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88958327|gb|CI095846.1|CI095846
genomic: TGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88845676|gb|CI008673.1|CI008673
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86433131|gb|CI093474.1|CI093474
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: CTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|88985455|gb|CI002972.1|CI002972
genomic: CTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|89183315|gb|CI045880.1|CI045880
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: GGAGAGGGTTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGEST: gi|29675908|gb|CB672183.1|CB672183
genomic: GGAGAGGG-TATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCA-GAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAG
EST: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86487600|gb|CI130233.1|CI130233
genomic: ATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: GAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGGEST: gi|86860035|gb|CI321984.1|CI321984
genomic: GAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAGG
EST: TGGAGAGGGTATTTTGTCCTTTGCCATGTCACATGCTCAAAAGGGCCAGA CCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAG
genomic: TGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGG-CAGAgtatgttgct ... ttgtatgtagCCGGCATTCCGAGAAATATGTCAGAAAAGGCCGTTTAAACTGGCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGCATTGTTTCAGACCCATGAAAACTTGGAGCATCTTGCTATGATGGAGAGGGTATTTGGTCCTTTGCCATGTCACATGCTCAAAAGGGCAGAgtatgttgctgtccttgatccgtctcattgtcagtaagcattcacagcattggggattagtaggtattgtgtgctcatttgttgcttgtatgtag
- - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG