1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
ATCAATCAAGTTAGCTTTTCAGGTTGGAAAACAGATGAATGTATTGCCATAGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttcttctttaatatctatctattttatatgcccatgcctaaatacctttattgtagtcaagactcagaaataccctgactgtttcttgtcatgtgtgaag
species | Oryza sativa |
transcript | LOC_Os12g20150.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAG GTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGGEST: gi|29613434|gb|CB618447.1|CB618447
genomic: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttc ... atgtgtgaagGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
EST: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAG GTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGGEST: gi|58668368|gb|CK057054.1|CK057054
genomic: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttc ... atgtgtgaagGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
EST: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAG GTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAGAGCTACACTGGEST: gi|29629544|gb|CB634553.1|CB634553
genomic: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttc ... atgtgtgaagGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
EST: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAG GTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGGEST: gi|11442555|gb|BF430458.1|BF430458
genomic: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttc ... atgtgtgaagGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
EST: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAG GTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
genomic: AGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttc ... atgtgtgaagGTTGTGAAGATGGGAAATATATTTGGTCACTAAGACTTAAAGCTACACTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAATCAAGTTAGCTTTTCAGGTTGGAAAACAGATGAATGTATTGCCATAGGGAATGAGATTCTTTCCTGGAAGCAAAAAGGTCTATCTGAAAGTGAAGgtgctgtttcttctttaatatctatctattttatatgcccatgcctaaatacctttattgtagtcaagactcagaaataccctgactgtttcttgtcatgtgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA