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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCATGAACCCCTAAAGCTTTTCCAAAAAGGTTCTTCATTCTTAGCTGGCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaagcatgacatttgccatctttcattaattgtatcatgaacaataattttgtatttcttcgcagacacacttttaagtcagtaataacagtttcacat...

Basic information

species Oryza sativa
transcript LOC_Os12g06810.4
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06810.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G167999_T02 (Zea mays), 5'ss of exon 10
AGCGCATGAACCCCTAAAGCTTTTCCAAAAAGGTTCTTCATTCTTAGCTGGCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaagcatgacatttgccatctttcatt-aattgtat--catgaacaataattttgtatttcttcgcagacacacttttaagt--cagtaataacagtttcacat
|| ||    ||||| |||  | ||| |||| ||| | |||||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||   ||  | | |||  || |||| |||  | |     |  |   || |   | |    | ||   ||||  ||  | | |   |||   | |   
AGGGCGCACACCCCAAAAAGTCTTCGAAAAGGGTGCCTCATTCTTAGCTGGGAATTTGTCATTCTCAAGGGCAAGAGCATCTTTAGAAGGATCGGCACCTgtaagcatgagggttatcttgttttgttgaattatatttcttttttgaagacactgcaccacat----gccatgattttgtgttcctgcagagacaccataaag-

upper sequence: LOC_Os12g06810.4 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 10
AGCGCATGAACCCCTAAAGCTTTTCCAAAAAGGTTCTTCATTCTTAGCTGGCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaag-catgacatttgccatctttcattaattgtatcatgaacaataattt-tgtatt---tcttcgcagacacacttttaagtcagtaataacagtttcacat
||  | | | || | |||| |||| || | |||   ||||||||| ||||| || ||||| || || |||||||||||||| |||||||||||| | |||||||| |||     || |  ||| |  |  | |  || |   |   |||| | | || |   || |    |   ||   | |  | | || ||    |       
AGGACGTAACCCTCAAAAGGTTTTTCAGAGAGGCGGTTCATTCTTGGCTGGAAACTTGTCCTTTTCAAGGGCAAGGGCTTCCTTAGAAGGATCAACCCCTgtaagtcattcttattcctgtctgttctgtaattcataaaagatgttaatgtgtatactgaatccttattg-tgcataataatatgaatagtaggcatcct----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29678630|gb|CB674905.1|CB674905
EST:     GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCT                         GTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA
genomic: GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaagcatga ... accactttagGTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA
EST: gi|88225951|gb|CI225867.1|CI225867
EST:     GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCT                         GTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA
genomic: GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaagcatga ... accactttagGTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA
EST: gi|29670913|gb|CB667188.1|CB667188
EST:     GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCT                         GTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA
genomic: GCAATTTGTCATTCTCCAGGGCAAGGGCTTCTTTAGAAGGATCAGCACCTgtaagcatga ... accactttagGTCCCTATACACAAAGAACCATCTTCAATTATTCCTGGAGTTCCAGCAATA