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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataactcatctttctgattatttttagtttcattcaaagagctcttctaattcaaccttccaatctgtgacgatgtcatatttatttcag

Basic information

species Oryza sativa
transcript LOC_Os12g04990.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g04990.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 1
----------GGAAAGATGAGTTCTCAATCTTTTCGCCCTCCAAAACCTGAAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataactcatctttctgattatttttagtttcattcaaagagctcttctaattcaaccttcca-atctgtgac----gatgtcatatttatttcag
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CTTCACTCAGGGAAAGGGAAGTCCTCAACCTTTTTGTCTTCCAAAACCTGAAGATGTTGCCACTATCTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaatcggccatccttctgattattctttgcttcatcagcaaagttcttttacttgtacatttcggatcggtgatattggatatcat-tttttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58655107|gb|CK043787.1|CK043787
EST:     AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG                         GGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
genomic: AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataact ... tttatttcagGGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
EST: gi|58694148|gb|CK082835.1|CK082835
EST:     AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG                         GGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
genomic: AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataact ... tttatttcagGGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
EST: gi|58689916|gb|CK078603.1|CK078603
EST:     AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG                         GGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
genomic: AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataact ... tttatttcagGGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
EST: gi|58666789|gb|CK055475.1|CK055475
EST:     AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAG                         GGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC
genomic: AAGATATTGCCACTATTTGTTACACTAGTGGCACTACTGGCACACCGAAGgtaaataact ... tttatttcagGGAGTTGTTCTTTCTCATGGGAATTTAATTGCAAATGTAGCAGGATCAAGC