Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGCATCTGCAGTTTGCCCTAGTGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattgtttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtattgttatttgttccttcag

Basic information

species Oryza sativa
transcript LOC_Os12g03720.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03720.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G180155_T01 (Zea mays), 5'ss of exon 4
-AGACGCATCTGCAGTTTGCCCTAGTGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattgtttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtattgttatttgttccttcag
    |||  |||| || ||||| |||||||| ||||| || ||||||||||| ||||| ||    |||||||||||||||||||||||||| || |||||||||||    |||| | | |    |  ||   |||   ||      || |   ||   || |   ||     ||||  |||            |  |||| ||| ||  |||||
CCACCGCG-CTGCTGTATGCCCCAGTGGATCCTGCAGAGTCATTGAAGTTCCGGAGGTTGCATGTTGTCTCCAGCCAGTGATTAACATAATCCCATTACAGgtttgt---ttgtctaattaagcttgttctgtca---tctgtttttttttggtacagttcactgttcactgaacagattc------------tgctgtttttttttggttcag

upper sequence: LOC_Os12g03720.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G005849_T02 (Zea mays), 5'ss of exon 10
AGACGCATCTGCAGTTTGCCCTAG---TGGATCTTGCAGGGTTATTGAAGTTCCAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacattgtttgaattgtttaatttcatcaaattccagaacttctacttatgctttatcatttgtgaaacaatttcatttactgagtgtattgttatttgttcc-ttcag
    ||  | || || ||||||||   ||| || ||||| || |||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||   |  | |||  ||||         |  | | |     | ||   || |  |||  ||  | |    ||||||    |||||| |  |||||||||| ||   |||||
---TGCCGCGGCTGTGTGCCCTAGCGGTGGGTCGTGCAGAGTCATTGAAGTTCCACAGGTTGCAGACTGTCTCCAGCCAGTGATCAACATAATTCCATTACAGgtttgtctaa-gcttggtttgt--------gtggagtcc---gtcctcagattttaattttccaccttt----caattt----tactga-taaattgttatttctttggttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86426649|gb|CI071746.1|CI071746
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88485727|gb|CI422998.1|CI422998
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88902738|gb|CI088276.1|CI088276
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88849760|gb|CI089866.1|CI089866
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|58600045|gb|CK010573.1|CK010573
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86479812|gb|CI122445.1|CI122445
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|89184705|gb|CI007130.1|CI007130
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88434918|gb|CI549115.1|CI549115
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|87026077|gb|CI250093.1|CI250093
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86834864|gb|CI345948.1|CI345948
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88837681|gb|CI079041.1|CI079041
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|3766919|gb|AU031029.1|AU031029
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88251227|gb|CI349655.1|CI349655
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86496093|gb|CI138726.1|CI138726
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86599332|gb|CI355949.1|CI355949
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAA                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86481498|gb|CI124131.1|CI124131
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|38481981|gb|CF966044.1|CF966044
EST:     CTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88902955|gb|CI088493.1|CI088493
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|86833049|gb|CI333648.1|CI333648
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
EST: gi|88251266|gb|CI349694.1|CI349694
EST:     CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAG                         CTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA
genomic: CAGAGGTCGCTGACTGTCTCCAGCCAGTGATTAACATAATTCCGTTACAGgtttgcacat ... gttccttcagCTGCTCGCATACCATCTGACAGTTCTTCGAGGATTTGATGTTGATCAACCA