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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGTGGCTGCTCTGTATGATGATAGAATTCTATTGATCTTTGGAGGCCAATCAAAATCCAAAACACTCAATGATGTTCATGCTCTAGACTTCGAAACGgtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttactgaaaaaaccattcttcttgttag

Basic information

species Oryza sativa
transcript LOC_Os11g43590.4
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G070553_T01 (Zea mays), 5'ss of exon 10
TCATGTGGCTGCTCTGTATGATGATAGAATTCTATTGATCTTTGGAGGCCAATCAAAATCCAAAACACTCAATGATGTTCATGCTCTAGACTTCGAAACGgtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttactgaaaaaaccattcttcttgttag-----
|||||| || || || || ||||||||| | |||||||| |||||||| || || || ||||| || || |||||| ||||||||||||| || ||||| |||| |  | ||| ||| | || | |||||| |||||| |   | || ||||||||     | |  || |        
TCATGTAGCCGCCCTTTACGATGATAGAGTCCTATTGATTTTTGGAGGTCAGTCGAAGTCCAAGACCCTGAATGATATTCATGCTCTAGATTTTGAAACAgtaagtattgtcgtgttactttattggttttgcttgttaaca-gattgctgaaaaatttgatatctttatactattag

upper sequence: LOC_Os11g43590.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA13G28760.1 (Glycine max), 5'ss of exon 8
TCATGTGGCTGCTCTGTATGATGATAGAATTCTATTGATCTTTGGAGGCCAATCAAAATCCAAAACACTCAATGATGTTCATGCTCTAGACTTCGAAACGgtaatttctatcgggtttccttgtaggtttttcttgttgatgcgcttac--tgaaaaaaccattcttcttgttag-------------------------
 |||||||| ||||| ||||||| || ||||||||| || ||||||||   |||||||||||  ||  | |||||  |  || | || ||||| ||||| || |  ||| |    | ||  || |  |||||  | |        | |   | |||    ||||| |  ||| |                          
CCATGTGGCAGCTCTTTATGATGGTAAAATTCTATTTATATTTGGAGGAGCATCAAAATCCAGGACCTTGAATGACTTGTATTCACTTGACTTTGAAACAgtgagctctct---atatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcag