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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGTTACGATGTAACTTTAGATGGCAGTACCACTGACTCTAGAAATTCACACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcactaaatgatattaatttcttctgtggtacatttgcactaaagttgatgcacagttattacatggtatgtttcttaatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g36070.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688057|gb|CB684332.1|CB684332
EST:     CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|66923674|gb|CX110522.1|CX110522
EST:     CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|24468830|gb|CA305779.1|CA305779
EST:     CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|29626154|gb|CB631165.1|CB631165
EST:     CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|86503375|gb|CI146008.1|CI146008
EST:     CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: CACAATATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|29614178|gb|CB619191.1|CB619191
EST:     TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|29688058|gb|CB684333.1|CB684333
EST:     TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
EST: gi|3759781|gb|C97039.1|C97039
EST:     TATTCCAAATGAACNTCCTGCTACATTGCCACCTCGAGATTCAAG                         AGAGTCCCAGCACANTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA
genomic: TATTCCAAATGAACATCCTGCTACATTGCCACCTCGAGATTCAAGgtcagcacta ... cttaatgcagAGAGACCCAGCACACTTATTCATTGTCCAATGAGAATGTTAATCATAGGGA