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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcatgatttttatttttttgcaacaatctttttattacttactgtttagtactgtggatttatccagtggtgataatagtaccataatatgctg...

Basic information

species Oryza sativa
transcript LOC_Os11g24540.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g24540.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G082330_T01 (Zea mays), 5'ss of exon 10
GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcatgatttttatttttttgcaacaatctttttattacttactgtttagtactgtggatt--tatccagtggtgataatagtaccataatat-gctg-
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GTTGCATCGGCACTTCTTAGTGCTGCATTTGTGTATGACATCTTTTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGCGTCATGATTGCAgtaagtgtatcaattct----tacagtgaagcttatgtaaatggtaattttttagtacgacaggttgatatgtaacatagacatagttgttaaggcatcactta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2310019|gb|C26174.1|C26174
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|38474789|gb|CF958922.1|CF958922
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|286796|gb|D15603.1|D15603
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGAA                         GTTGCTCGTGGTGATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATA
EST: gi|218478582|gb|FG949084.1|FG949084
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|396941284|gb|HO188493.1|HO188493
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|27578188|gb|CB000883.1|CB000883
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|218501626|gb|FG955998.1|FG955998
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
EST: gi|218504564|gb|FG954781.1|FG954781
EST:     TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA                         GTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA
genomic: TCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCAgtaagtgcat ... tactgcacagGTTGCTCGTGGTGATAACTCTGGGGAAGCAATTCCGATGCTCTTAAGAATA