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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagattttgtttttctgatgcatccaatgcctaagttcatatattgtttccattgtgctgtatcttacacacagcttggtgtatataccag

Basic information

species Oryza sativa
transcript LOC_Os11g08950.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g08950.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G032337_T03 (Zea mays), 5'ss of exon 8
CTTGCCTACAGAGGACCATGCCAACAAAGTGGAGAGGATGACCCTTGCTGCTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagattttgtttttct----gatgcatccaatgcctaagttcatatattgtttccattgtgctgtatcttacacacagcttggtgtatataccag---
|||||| || || | ||||| | |  |||| |||||||||||||||||||| |||||||||||||||| |||||||||   ||||||| | ||||  | ||||||  | | |   |||    ||||||| |  ||    |||    ||  |||||  |||      | |||||||  || |||| |||| ||        
CTTGCCCACTGAAGGCCATGTCGATGAAGTTGAGAGGATGACCCTTGCTGCGTCCCTCTGCATCAGACAAACACCTCAGAACCGTCCTGAAATTGATGCTgtaagcatctatccctcttcttgatgcatgctttgtgcgagtgttcatgctgtttatatt------tttcttacaagcatcttgatgtacatgatgctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27920488|gb|CB096296.1|CB096296
EST:     CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT                         GTTCTGAAGCTACTTAACGGCGACAATGGCATTCTGAAGTGGGCTAGATCA
genomic: CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagatttt ... tatataccagGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA
EST: gi|88236659|gb|CI235861.1|CI235861
EST:     TCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT                         GTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA
genomic: TCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagatttt ... tatataccagGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA
EST: gi|25797657|gb|CA753618.1|CA753618
EST:     CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT                         GTTCTGAAGCTATCT-AACGGCGACCATGGTATTCTGAGGTGGGCTAGATC
genomic: CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagatttt ... tatataccagGTTCTGAAGCTA-CTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATC
EST: gi|29633016|gb|CB638025.1|CB638025
EST:     CACATTGCAGTT                         GTTCTGAAGCTACTTAACGGCGACAATGGTATTTTGAAGTGGGCTAGATCA
genomic: CACATTGCAGTTgtaagatttt ... tatataccagGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA
EST: gi|29676375|gb|CB672650.1|CB672650
EST:     CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTT                         GTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA
genomic: CTTCCCTCTGCATCAGACCAACACCTCAACGCCGTCCTCACATTGCAGTTgtaagatttt ... tatataccagGTTCTGAAGCTACTTAACGGCGACAATGGTATTCTGAAGTGGGCTAGATCA