1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGgtgactttttttaaaaaaagtatatgttcgtgcgttgtaggtgtggaacatattatgtgtttctaacctcatggttttattgtatag
species | Oryza sativa |
transcript | LOC_Os10g40020.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTACACAAAACTGTAGAACAG GGTGCTACAACGACTTGTTATGTGGCACTACATTCTCAATTCACCGGGATAEST: gi|88832911|gb|CI369801.1|CI369801
genomic: GTACACAAAACTGTAGAACAGgtgacttttt ... tattgtatagGGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATA
EST: GAAGATTCGTACACAAAACTGTAGAACAG GGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATAEST: gi|88967927|gb|CI098169.1|CI098169
genomic: GAAGATTCGTACACAAAACTGTAGAACAGgtgacttttt ... tattgtatagGGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATA
EST: CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG GGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATAEST: gi|86433247|gb|CI093590.1|CI093590
genomic: CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGgtgacttttt ... tattgtatagGGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATA
EST: CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG GGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATA
genomic: CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGgtgacttttt ... tattgtatagGGTGCTGCAACGACATGTTATGTGGCACTACATTCTCAATTCACCGGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAGgtgactttttttaaaaaaagtatatgttcgtgcgttgtaggtgtggaacatattatgtgtttctaacctcatggttttattgtatag
- - - - - - - - TGGAAG
- - - - - - - - GGAAGA