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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctctctagctagcttttattctctgtatattagcattttttttgtggaatcattggcctatccatgcctgcgaaatggaatcaacaatttcagc...

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G082502_T02 (Zea mays), 5'ss of exon 9
GTACCATTTGGACCTATGCAGAAATGTCTTTGGTGAAGGTGTTTATCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctctct------agctagcttttattctctgtatattagcattttttttgtggaatcattggcctatccatgcctgcgaaatggaatcaacaatttcagc-----------------------------------
|||||||||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||      ||||||||||  ||  ||||    |  |||      ||   ||  |   ||   | |       | |   ||| ||  |  || |                                      
GTACCATTTGGACCTATGCAGACATGTCTTTGGGGAAGGCGTTTATCCCGATGTGTTCATGACGAACTTGTATTATGGAGGCACAAGAATCGCTGgttcgtctctctctagctagctagctttggttgcctgttgtgtgacatcaaaagtg-acaacgagcagctctttcgacttcccaatcgggactcctcttttcccatttctctgatgcttcatcaaatatatatgcacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793324|gb|CF322543.1|CF322543
EST:     TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTG                         CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
genomic: TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctct ... aatggtgcagCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
EST: gi|88198073|gb|CI197923.1|CI197923
EST:     TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAGGAATTGCTG                         CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
genomic: TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctct ... aatggtgcagCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
EST: gi|157649959|gb|EX449593.1|EX449593
EST:     GTTC-TGAC-AACTTGTATTACGGAGGCACAAGAATTGCTG                         CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
genomic: GTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctct ... aatggtgcagCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCT
EST: gi|58689723|gb|CK078410.1|CK078410
EST:     TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTG                         CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATG
genomic: TCCTGATGTGTTCATGACAAACTTGTATTACGGAGGCACAAGAATTGCTGgtttgtctct ... aatggtgcagCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATG