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GTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatttttttctttgaataattagcttcaatcatgttacctgttttgtttcttcaagtatggtcgtttggatctcaattaaggtatggtgctagt...
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAG-ATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|33794773|gb|CF323266.1|CF323266
genomic: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|33796295|gb|CF324015.1|CF324015
genomic: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|3768110|gb|AU032137.1|AU032137
genomic: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|29667886|gb|CB664161.1|CB664161
genomic: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|87031114|gb|CI259694.1|CI259694
genomic: CCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: CAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTEST: gi|29678500|gb|CB674775.1|CB674775
genomic: CAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
EST: GACAAATTTATACTATGGAGGCACAAGAATTGCAG GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
genomic: GACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatt ... atgcctgcagGTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCATTTGGACTTGTGCAGAAATGTTTTTGGGGAAGGAGTTTACCCTGATGTATTCATGACAAATTTATACTATGGAGGCACAAGAATTGCAGgtatatcatttttttctttgaataattagcttcaatcatgttacctgttttgtttcttcaagtatggtcgtttggatctcaattaaggtatggtgctagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG