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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGGTGTGCTTAATATGGCTAAACAGGCGATGCTAAGGATGCCAGGGATAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctattttatgcaagaaaatatcaacttctcttttccaatatatatcttctgccatacatgtgttcaattgcaattctggggcaagctttataaagtcctgtttttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcag

Basic information

species Oryza sativa
transcript LOC_Os10g35960.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G085747_T01 (Zea mays), 5'ss of exon 10
GATAGGTGTGCTTAATATGGCTAAACAGGCGATGCTAAGGATGCCAGGGATAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagcta-ttttatgcaagaaaatatcaac-ttctcttttccaatatatatcttctgccatacatgtgttcaattgcaattctggggcaagct--ttataaagtcctgtttttacatgaataataggtttgcttcttattttccactgttatgctgtaccatgcag
||||||||||||||  |||||||||||||| ||| |||||||||| |||||  |||| | |||||||||||||||||||||||||||||||||||||||||||||| |  ||||  |||  ||| |  ||  | ||  |||  | | || ||    || |||   | |||  |  || |   |   |||       || |    ||||||| |    | | |  |||                                        
GATAGGTGTGCTTAGCATGGCTAAACAGGCAATGTTAAGGATGCCTGGGATCCACAGAACCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagccaactttagacaaacaaacaaaaaaatcctgctttttactctaaataaa-tgtcatttttatgtcaatctgaatggcaaaggctgataaattgtgcgctcctgttgtgctgt-acttgtag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596497|gb|CK007025.1|CK007025
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: gi|58673493|gb|CK062179.1|CK062179
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: gi|58665242|gb|CK053928.1|CK053928
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: gi|58601869|gb|CK012397.1|CK012397
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACGAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: gi|29662805|gb|CB659080.1|CB659080
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
EST: gi|29678813|gb|CB675088.1|CB675088
EST:     TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGAT                         GGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT
genomic: TAAACAGGAGCGGGGAAGGGCATAATCAATTCTGGGTTCTGGACAAAGATgtaagctatt ... taccatgcagGGACTTATTACCAAATCCAGAAAGGGCCTGGATCCTGCAGTTGCTCGCTAT