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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTGGAAATTCCAATAGATTCCTGGTTATTCCACTCCATGGTTCTATGCCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAGgtaaatcacctaggtacctacctagaaatatagaagattggacttggatgcatgaatctttgctgtctagttgttatggctaatatgttatagccaagtt...

Basic information

species Oryza sativa
transcript LOC_Os10g33275.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g33275.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G052798_T01 (Zea mays), 5'ss of exon 4
TCCTTGGAAATTCCAATAGATTCCTGGTTATTCCACTCCATGGTTCTATGCCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAGgtaaatcacctaggtacctacctagaaatatagaagattggacttggatgcatgaatctttgctgtctagttgttatggctaatatgttatagccaagtt---------
||||||| | | | |||||||| || ||| ||||  | ||||||||||||||  |||| ||||| ||  |||||||||| ||||||||||| |||||||||| |  ||  ||| |||| |   ||||| ||||    |||   | || | |  | ||  |    |   || ||    ||  |||    | |   || ||          
TCCTTGGTAGTCCTAATAGATTTCTTGTTCTTCCTTTGCATGGTTCTATGCCACCTGTGAATCAACGCAAAATTTTTGACAGACCACCAGCTAATATGAGgtgagccagttagctacccattgagaaa-atag----ttgtgttaggttcctggcataatgagggatgagatg----ggtcaatccactttcagcatgtgtttggttga

upper sequence: LOC_Os10g33275.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G399212_T01 (Zea mays), 5'ss of exon 12
TCCTTGGAAATTCCAATAGATTCCTGGTTATTCCACTCCATGGTTCTATGCCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAGgtaaatcacctaggtacctacctagaaatatagaagattggacttggatgcatgaatctttgctgtctagttgttatggctaatatgttatagccaagtt---------
||||||| | | | |||||||| || ||| ||||  | |||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||||||| |  ||  |||||||| |   ||||| ||||    |||   | || | |  | |   |    |   || ||    ||  |||    | |   || ||          
TCCTTGGCAGTCCTAATAGATTTCTTGTTCTTCCTTTGCATGGTTCTATGCCAACTGTGAATCAACGCGAAATTTTTGACAGACCACCAGCTAATATGAGgtgagccagttaggtacccattgagaaa-atag----ttgtgttaggttcctgggacaatgagggatgagatg----ggtcaatccactttcagcatgtgtttggttga

upper sequence: LOC_Os10g33275.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G119671_T01 (Zea mays), 5'ss of exon 3
TCCTTGGAAATTCCAATAGATTCCTGGTTATTCCACTCCATGGTTCTATGCCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAGgtaaatcacctaggtacctacctagaaatatagaagattggacttggatgcatgaatctttgctgtctagttgttatggctaatatgttatagccaagtt---------
||||||| | | | |||||||| || ||| ||||  | |||||||||||||| | ||| ||||| || ||| ||||||| ||||||||||| |||||||||| |  ||  ||| |||| |   ||||| ||||    |||   | || | |  | ||  |    |   || ||    ||  |||    | |   || ||          
TCCTTGGCAGTCCTAATAGATTTCTTGTTCTTCCTTTGCATGGTTCTATGCCAATTGTGAATCAACGCGAATTTTTTGACAGACCACCAGCTAATATGAGgtgagccagttagctacccattgagaaa-atag----ttgtgttaggttcctgggataatgagggatgagatg----ggtcaatccactttcagcatgtgtttggttga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112786422|gb|EE590731.1|EE590731
EST:     CCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAG                         GAAAATTGTTTTGGCAACAAATATTGCAGAAAGCAGTATTACAATAGATGA
genomic: CCCACTGTCAATCAGCGTGAAATTTTTGATAGACCACCAGCCAATATGAGgtaaatcacc ... tatttttcagGAAAATTGTTTTGGCAACAAATATTGCAGAAAGCAGTATTACAATAGATGA