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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagtttcttagttgtttttaggaacttcttaattttccataaagtaatgcatcttggtagatagcataatatatcattatcacataatttgtag...

Basic information

species Oryza sativa
transcript LOC_Os10g30610.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g30610.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G430675_T03 (Zea mays), 5'ss of exon 11
TTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagtttctta-gttgtttttaggaacttcttaattttccataaagtaatgcatcttggtagatagca-taatatatcattatcacataatttgtag-
 ||||||||||||| || || ||||||||||| |||||||||| ||||  ||||||| |||||||||||||||| ||||||||||||||||| ||||| ||||||||||  ||||  |||||||| ||    ||  ||| ||| |||||| || |  |       | | ||   |    | |  | |  |     ||   |  
CTAATATTGTGTATTGCTGGTATATGCATTGGTACAATTGCTAGAGTTCGAGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagcatcttttgttgttttcaga---ttagtaaatttacataaactattcaaggaacaaaaaaagggctgccctgttgtgaaaaaggggttatcata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|112786147|gb|EE592158.1|EE592158
EST:     AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCT                         CGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
genomic: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagt ... ttttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
EST: gi|29637152|gb|CB642161.1|CB642161
EST:     AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCT                         CGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC
genomic: AGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTgtaagtcagt ... ttttgtgcagCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGC