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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaatttttattgcttttcatatatgatacaatagtttagtttttgccaattacagttactatacaaatcttttggtactttacttctgtagaatccgtaccaactcttattatgattcag

Basic information

species Oryza sativa
transcript LOC_Os10g26140.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G444692_T02 (Zea mays), 5'ss of exon 8
-------------------------GCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaatttttatt--gct-tttcatatatgatacaatagtttagtttttgc--caattacagttactatacaaatcttttggtactttacttctgtagaatccgtaccaactcttattatgattcag
                         |||||||| |||||||  |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||   ||  ||     || ||  ||  ||| | ||||| |  | || ||  || |  ||| |||   |     ||| | | || | ||||| |                       
CTAACATGCTTATCTTGAATTACAGGCTATTGCTGCTAGTAGTTCTGATGCTCCTTCAATTTTGGAATTCCTTCAGAGACGAAAGTCTGACCCAAGCATGgtaatttttattttactactttgccgataatcaaagtgttcaatttttccagctatcactattgcggtaccaattcct-----cttaattgctat-gaatcag-----------------------

upper sequence: LOC_Os10g26140.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G444692_T03 (Zea mays), 5'ss of exon 4
GCTATTGCCGCTAGTACATCTGATGCTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaatttttatt--gct-tttcatatatgatacaatagtttagtttttgc--caattacagttactatacaaatcttttggtactttacttctgtagaatccgtaccaactcttattatgattcag
|||||||| |||||||  |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||   ||  ||     || ||  ||  ||| | ||||| |  | || ||  || |  ||| |||   |     ||| | | || | ||||| |                       
GCTATTGCTGCTAGTAGTTCTGATGCTCCTTCAATTTTGGAATTCCTTCAGAGACGAAAGTCTGACCCAAGCATGgtaatttttattttactactttgccgataatcaaagtgttcaatttttccagctatcactattgcggtaccaattcct-----cttaattgctat-gaatcag-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58592579|gb|CF990887.1|CF990887
EST:     CTCCTTCGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG                         GTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
genomic: CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaattttta ... tatgattcagGTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
EST: gi|29669542|gb|CB665817.1|CB665817
EST:     CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG                         GTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
genomic: CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaattttta ... tatgattcagGTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
EST: gi|29613813|gb|CB618826.1|CB618826
EST:     CTCCTTCGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG                         GTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
genomic: CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaattttta ... tatgattcagGTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
EST: gi|88341692|gb|CI641444.1|CI641444
EST:     CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG                         GTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
genomic: CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaattttta ... tatgattcagGTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
EST: gi|33676205|gb|CF304444.1|CF304444
EST:     CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATG                         GTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA
genomic: CTCCTTTGATTCTGGAATTCCTTCAGAGACGAAAGTCTGACCCTAGCATGgtaattttta ... tatgattcagGTTAAGACTCTAAGCCTTGCTATAGTCCGGACTATCATCCTGGAGAGGAGA