Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACCTGAAGGCCCTGAAGAGGGCGAGGCATATGATGAAGGTGACTACCAGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagtttttgttggcatcacagttttctttactagtactgtaattattcccctaataatgttaatgatgatctctgtcaaatccttgcaccatttcag

Basic information

species Oryza sativa
transcript LOC_Os10g02630.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89198764|gb|CI003501.1|CI003501
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|29684126|gb|CB680401.1|CB680401
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88220411|gb|CI219971.1|CI219971
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86596907|gb|CI270703.1|CI270703
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|29663369|gb|CB659644.1|CB659644
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88250167|gb|CI250444.1|CI250444
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87017796|gb|CI273818.1|CI273818
EST:     GTATCACCAAGCTGCTGATGAGCACAATAACTGAAAATTTGATTTCTGCA                         CTGCTTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAG
genomic: GTATCACCAAGCTGCTGATGAGCACAATAACTG-AAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGC-TTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAG
EST: gi|89161784|gb|CI100944.1|CI100944
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86437018|gb|CI118740.1|CI118740
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87020848|gb|CI269565.1|CI269565
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86478363|gb|CI120996.1|CI120996
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86435176|gb|CI106409.1|CI106409
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTACTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86424360|gb|CI063121.1|CI063121
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88841915|gb|CI081171.1|CI081171
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|15852181|gb|BI804977.1|BI804977
EST:     AGTATCACCAAGCTGCTGATGAGCACCATAACTGAAATTTGATTGCTGCAA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAG
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGC-Agtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAG
EST: gi|88850042|gb|CI091337.1|CI091337
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTCGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88831379|gb|CI083773.1|CI083773
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|3762743|gb|AU029495.1|AU029495
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88536793|gb|CI464581.1|CI464581
EST:     ANTATCACCAANCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86427423|gb|CI072520.1|CI072520
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|18387940|gb|BM421138.1|BM421138
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88962273|gb|CI097425.1|CI097425
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87006887|gb|CI275195.1|CI275195
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86429889|gb|CI082312.1|CI082312
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86487932|gb|CI130565.1|CI130565
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88413808|gb|CI528580.1|CI528580
EST:     AGTATCACCAAGCTGCTNATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTNAACGGTTNTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|89182618|gb|CI113987.1|CI113987
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|29680135|gb|CB676410.1|CB676410
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88994260|gb|CI117214.1|CI117214
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87031021|gb|CI270169.1|CI270169
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87023271|gb|CI272099.1|CI272099
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|58677989|gb|CK066676.1|CK066676
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87016250|gb|CI271661.1|CI271661
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88381302|gb|CI528282.1|CI528282
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86420390|gb|CI056379.1|CI056379
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|89173595|gb|CI041488.1|CI041488
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86481950|gb|CI124583.1|CI124583
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88958610|gb|CI096126.1|CI096126
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|87030217|gb|CI270227.1|CI270227
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88219476|gb|CI219036.1|CI219036
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86437827|gb|CI119747.1|CI119747
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|86597048|gb|CI272643.1|CI272643
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATCGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88966398|gb|CI119533.1|CI119533
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA
EST: gi|88980847|gb|CI022537.1|CI022537
EST:     AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCA                         CTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCCAAAGAGGCAGA
genomic: AGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 74 (downstream exon)
Score: 34

AGAACCTGAAGGCCCTGAAGAGGGCGAGGCATATGATGAAGGTGACTACCAGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagttttt ... accatttcagCTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGAAGCATGTTTACTTGTTGCCTGGCGCTTGAGCTCTGCCGCTTTGCAAGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAACCTGAAGGCCCTGAAGAGGGCGAGGCATATGATGAAGGTGACTACCAGTATCACCAAGCTGCTGATGAGCACAATAACTGAAATTTGATTGCTGCAgtaagtttttgttggcatcacagttttctttactagtactgtaattattcccctaataatgttaatgatgatctctgtcaaatccttgcaccatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC