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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtatttacttccatactgtacgtggtggtgctattattgggcaattttatttgtttaagtgctaacttctgtttttttccccaagtag

Basic information

species Oryza sativa
transcript LOC_Os09g36530.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36530.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G103458_T01 (Zea mays), 5'ss of exon 10
-----CAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTTAAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtatttacttccatactgtacgtggtggtgctattattgggcaattttatttgtttaagtgctaacttctgtttttttccccaagtag
     | |||||| |||||||| ||||||||||||||  |||  ||||||||||||||  ||     |   |    ||| | |   |||   | |    |    || ||| |||  ||||   |||    ||  |     |  | ||| || |  |      ||||| |   || | | |                 
CAAATCCAGAAGCCAATTGTGGCCACTTTCAGTGGGCACCTGGAAAGTCTAAAGAGAAGAGCTCTAAAGAGAAACGTCTGTGACTTCAT---TTTTCTCCCAGgtgaaaggattc-cttcagcactcagtgtatt--cctttgtgttgtgctaactgccaattttaactaggaa-tccag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88262507|gb|CI366281.1|CI366281
EST:     AG                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
genomic: --gtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
EST: gi|88262507|gb|CI366281.1|CI366281
EST:     AG                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
genomic: --gtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
EST: gi|88262507|gb|CI366281.1|CI366281
EST:     AG                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
genomic: --gtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTT
EST: gi|88254612|gb|CI353436.1|CI353436
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACT                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
EST: gi|88271762|gb|CI387815.1|CI387815
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACT                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
EST: gi|86437027|gb|CI118749.1|CI118749
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|86437027|gb|CI118749.1|CI118749
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|86437027|gb|CI118749.1|CI118749
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|88969421|gb|CI382959.1|CI382959
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|88969421|gb|CI382959.1|CI382959
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|88969421|gb|CI382959.1|CI382959
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTT                         A
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCAC-Tgtaagtattt ... ccccaagtag-
EST: gi|88261828|gb|CI365404.1|CI365404
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACT                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
EST: gi|88488903|gb|CI426174.1|CI426174
EST:     GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACT                         CCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC
genomic: GAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTgtaagtattt ... ccccaagtagCCTGGACATGTGTGTGTCACTTGTTTCTATACACATGAAATGCTGATGTTC