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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGGCATCGTTGCATCTGTTGGAGATTCAGTGAACCATATTAAAGTTGGCAGTCCTGTAGCCCTTATGATTTTTGGGGCCTATTCTGAATTTACTCAGgtattacattctatgcatctgtgttacacactaaattaccaatgaccttcaccactccttcaatggatcatttccagcatccatctatcagttcaccttttgactttacatctttatgattaaag

Basic information

species Oryza sativa
transcript LOC_Os09g28570.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G368058_T01 (Zea mays), 5'ss of exon 5
TGTGGGCATCGTTGCATCTGTTGGAGATTCAGTGAACCATATTAAAGTTGGCAGTCCTGTAGCCCTTATGATTTTTGGGGCCTATTCTGAATTTACTCAGgtattacattctatgcatctgtgttacacactaaat----taccaatgaccttcaccactccttcaatggatcatttccagcatccatctatcagttcaccttttgactttacatctttatgattaaag
 ||||| || ||||| |||||||||||||| ||||| ||||| |||||||||| | |||| |||||||||| ||||||   |||| |||||||    | |||||||| |||||||  |     |||||||   |      | ||||  |     || | || |  | |  |   |||   | |  ||  |  ||  ||                               
CGTGGGAATTGTTGCTTCTGTTGGAGATTCGGTGAAACATATCAAAGTTGGCACTTCTGTTGCCCTTATGACTTTTGGAAGCTATGCTGAATTCGTGCTGgtattactttctatgacttgtcattacacaactagcatggtgccaagcattgcaacaaatcttgaattacaaattttttgggaagcacttcacatctctt-----------------------------

upper sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G147191_T02 (Zea mays), 5'ss of exon 10
TGTGGGCATCGTTGCATCTGTTGGAGATTCAGTGAACCATATTAAAGTTGGCAGTCCTGTAGCCCTTATGATTTTTGGGGCCTATTCTGAATTTACTCAGgtattacattctatgcatctgtgttacacactaaattacc-aatgaccttcaccact------------ccttcaatggatca--tttccagcat--------ccatctatcagttc-accttttgactttacatctttatgattaaag
|||||| || |||||  |||||||||||||||| |  ||||| |||||||||| |||||| |||||||||| |||||||  |||| ||||||| ||  |||| || |||| | |||   | | |  ||||  || ||||| | |  | |    |  |             || ||    || |  |||  |  ||            || ||||| |    ||||  ||||   | |||     | |||
TGTGGGAATTGTTGCCGCTGTTGGAGATTCAGTCAGTCATATCAAAGTTGGCACTCCTGTGGCCCTTATGACTTTTGGGAGCTATGCTGAATTCACGGAGgtcttccattttgtgcccttctatcgcacaacaagttacctagtagcttctgtcgttgaaatgagatcatctgcagcatattaaatttgaaatatagttatgcttgcctgtcagtactggtttttatctttgttttttttctcgtgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684560|gb|CK073247.1|CK073247
EST:     CTTATGACTTTTGGGG-CTATTCTGAA-TTACTCAG                         GTTCCAGCCAAGCATCTTCTTCCGGTG-CAAGAGCAGATCCAGAGGTCGTT
genomic: CTTATGATTTTTGGGGCCTATTCTGAATTTACTCAGgtattacatt ... atgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTT
EST: gi|88405965|gb|CI591360.1|CI591360
EST:     CAGTCCTGTAGCCCTTATGATTTTTGGGGCCCTATTCTGAATTTACTCAG                         GTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATC-AGAGGTCGTT
genomic: CAGTCCTGTAGCCCTTATGATTTTTGGGGCC-TATTCTGAATTTACTCAGgtattacatt ... atgattaaagGTTCCAGCCAAGCATCTTCTTCCGGTGCCAAGACCAGATCCAGAGGTCGTT