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TGACGGTGCTGCCGCATTAGTATTGGTGAGTGGGCAGAAGGCACAAGAACTTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccacagtatcacttctaatctgacttaaacaatattgtacaccctctgaggtaccttaataaaatgatatggtttgtgaatggaaataagaatct...
species | Oryza sativa |
transcript | LOC_Os09g07830.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|27410210|gb|CA923280.1|CA923280
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|88993566|gb|CI110387.1|CI110387
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: CAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|29640958|gb|CB645965.1|CB645965
genomic: CAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|86498219|gb|CI140852.1|CI140852
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|87020189|gb|CI259259.1|CI259259
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|33683367|gb|CF311606.1|CF311606
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|88906443|gb|CI375515.1|CI375515
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|5607308|gb|AU075980.1|AU075980
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTGGACTGCAAGTTATTGCCCGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTCCCACTAGCCCGGCACTTGCCATACCTAAGGCTCTTEST: gi|89182185|gb|CI113554.1|CI113554
genomic: TTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
EST: TTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAA GCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
genomic: TTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccaca ... tgttatgcagGCTCCTGAATTATTTACCACTAGCCCGGCACTTGCCATACCTAAGGCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGGTGCTGCCGCATTAGTATTGGTGAGTGGGCAGAAGGCACAAGAACTTGGACTGCAAGTTATTGCACGAATCAAAGGATTTGCAGATGCAGCTCAAgtaagccacagtatcacttctaatctgacttaaacaatattgtacaccctctgaggtaccttaataaaatgatatggtttgtgaatggaaataagaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA