1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttataaaatatttgaaccctagtcagtatttgcatttgtgaaatccttaagcaagctgacttttttgtaatgtagctctactggaagtctggaac...
species | Oryza sativa |
transcript | LOC_Os09g07510.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58683974|gb|CK072661.1|CK072661
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACEST: gi|58693179|gb|CK081866.1|CK081866
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAAC
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29641703|gb|CB646710.1|CB646710
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|38476835|gb|CF960968.1|CF960968
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|25806838|gb|CA762799.1|CA762799
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: CCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58682290|gb|CK070977.1|CK070977
genomic: CCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86251810|gb|CI019002.1|CI019002
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87041657|gb|CI196279.1|CI196279
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87017349|gb|CI301385.1|CI301385
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86415586|gb|CI029597.1|CI029597
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29642127|gb|CB647134.1|CB647134
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87041898|gb|CI196520.1|CI196520
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87038212|gb|CI192834.1|CI192834
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58687550|gb|CK076237.1|CK076237
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87036423|gb|CI191045.1|CI191045
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87041468|gb|CI196090.1|CI196090
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58663458|gb|CK052144.1|CK052144
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29667131|gb|CB663406.1|CB663406
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58685311|gb|CK073998.1|CK073998
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29621783|gb|CB626794.1|CB626794
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|58668351|gb|CK057037.1|CK057037
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|10794822|gb|AU108788.1|AU108788
genomic: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|87039324|gb|CI193946.1|CI193946
genomic: TTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86899096|gb|CI296244.1|CI296244
genomic: TGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|88957286|gb|CI095262.1|CI095262
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATATACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|86414361|gb|CI068764.1|CI068764
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: CGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|88974279|gb|CI019952.1|CI019952
genomic: CGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|8857541|gb|AU094859.1|AU094859
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|33656227|gb|CF278841.1|CF278841
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: AGCTGAGGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTGEST: gi|29621782|gb|CB626793.1|CB626793
genomic: AGCTGAGG-AGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
EST: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAG GTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
genomic: TAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttata ... cattttctagGTGCTGGAGAAGATAAACAACCCGCATTATCTCTACCGCATGACCATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCTCAATCAGAGATGCTGCTGCAAACAACTTGAAGCGCCTAGCTGAGGAGTTTGGTCCAGAATGGGCGATGCAGCATATAATCCCTCAGgttatttataaaatatttgaaccctagtcagtatttgcatttgtgaaatccttaagcaagctgacttttttgtaatgtagctctactggaagtctggaac
- - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG