Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAGgtaaaatactaaccatattaatgagagatcatttctgtgcttatttatctgtatattacataattaaaattcttaattcactagagctaagcttcaaaaagctgattattttgtactattctttcag

Basic information

species Oryza sativa
transcript LOC_Os09g06499.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g06499.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G068212_T01 (Zea mays), 5'ss of exon 9
TTATTTGGGCTTGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAGgtaaaatactaaccatattaatgagagatcatttctgtgcttatttatctgtatattacataattaaaattcttaattcactagagctaagcttcaaaaagctgattattttgtactattctttcag
|||||||| || || |||||||| || || |||||||| |||||| |||||||||| |||||||||||| | |  | ||||   || ||| | |       |  ||| |  || | || |||| |      ||||| ||  ||||| | ||   | | ||  || |     | ||     || | |||
TTATTTGGTCTGGGAATAGCAAATATCTGTGGTTCATTCTTCTCTGCATATCCTGCCACAGgtaaaatattta--acattatatagtgataaataacccagtcctttgttagtcttttgcatattg-----tcttagtt-gctagatcaaaatattacaagcctaaactactggt-----tcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29613614|gb|CB618627.1|CB618627
EST:     TGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAG                         GTTCCTTTTCTAGGTCAGCTGTGAATCATGAAAGTGGAGCAAAAACTGGTC
genomic: TGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAGgtaaaatact ... attctttcagGTTCCTTTTCTAGGTCAGCTGTGAATCATGAAAGTGGAGCAAAAACTGGTC
EST: gi|29661763|gb|CB658038.1|CB658038
EST:     TGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAG                         GTTCCTTTTCTAGGTCAGCTGTGAATCATGAAAGTGGAGCAAAAACTGGTC
genomic: TGGTATAGCAAACATATGCGGTTCATTTTTCTCTTCATATCCTGCTACAGgtaaaatact ... attctttcagGTTCCTTTTCTAGGTCAGCTGTGAATCATGAAAGTGGAGCAAAAACTGGTC