Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGATGAGACTGAAGCAAGGAGGGAAAGAGCCAAAAATTCACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGgtatgttcaacatgctcaagtttgatgtctctttgagtttttttttctttctacaacaactatacgtgcagctttagtcattcttgtgctcataacttac...

Basic information

species Oryza sativa
transcript LOC_Os08g42740.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g42740.5 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G100913_T02 (Zea mays), 5'ss of exon 10
TATGATGAGACTGAAGCAAGGAGGGAAAGAGCCAAAAATTCACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGgtatgttcaacatgctcaagtttgatgtctctttgagtttttttttctttctacaacaactatacgtgcagctttagtcattcttgtgctcataacttac
|| || |||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||| | || |   ||| |||||| | |  |  | | |     | | |        |   | |   |   || |    | |   ||| |    | |
TACGACGAGACTGATGCAAGGAGGGAAAGAGCTAAAAACTCTCTTGAGAGATATATGCATTACTATGAGCGCTGGGCATCCAATCAGACAgtaagttctagataccttagtctgatgtatataggtttctgtcaaaatatatttgttttgtgctcataatgtaatatttgaaccttctctcttgtgctgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643283|gb|CB648290.1|CB648290
EST:     CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACG                         TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA
genomic: CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGgtatgttcaa ... atattgccagTCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA
EST: gi|29643281|gb|CB648288.1|CB648288
EST:     CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACG                         TCGAGGCACAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA
genomic: CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGgtatgttcaa ... atattgccagTCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA
EST: gi|29677672|gb|CB673947.1|CB673947
EST:     CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACG                         TCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA
genomic: CACTTGAGAGATACATGCATTACTATGAGCGCTGGGCATCTAATCAGACGgtatgttcaa ... atattgccagTCGAGGCAGAAGGCACAAGCAGATCTGCAAAAGGCAGAAAAGGAACAA