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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACAATCCAAGCAACTGAAGGTTACCTGCAACTTGAACAATGCTGCCTGCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcagttcttcctgcaaaagacccatttgttatgtgttttggtaaaccaaggtaacattctggtgtttgttgccag

Basic information

species Oryza sativa
transcript LOC_Os08g41390.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41390.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G096585_T04 (Zea mays), 5'ss of exon 10
GAAACAATCCAAGCAACTGAAGGTTACCTGCAACTTGAACAATGCTGCCTGCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcagttcttcctgcaaaagacccatttgttatgtgttttggtaaaccaaggtaacattctggtgtttgttgccag
||| |||||||||||||||||| | | ||||||| | ||||||||||||||||| |||||| |||| ||||||||| |||||| ||||||||||||||||||||| ||   | |||||||||      | |   ||||||  |   ||||| || | | || || || |  |  ||  |||
GAAGCAATCCAAGCAACTGAAGATCAGCTGCAACCTAAACAATGCTGCCTGCAAACTGAAGTTGAAGGATTACAAGGAAGCTGCGAAGCTTTGCACCAAGgtacaatc---tattcctgcaatgcgggcgtgaattatgt--tgcagtaaagcaggctgaccttgtgat--tccttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38476999|gb|CF961132.1|CF961132
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88993419|gb|CI257847.1|CI257847
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88849052|gb|CI087574.1|CI087574
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86260084|gb|CI065957.1|CI065957
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88902626|gb|CI088164.1|CI088164
EST:     AGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88263384|gb|CI367158.1|CI367158
EST:     AAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTC-AGGCTTTATACAGGAGGGCCCAA
genomic: AAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|58677606|gb|CK066293.1|CK066293
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88220221|gb|CI219781.1|CI219781
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88990391|gb|CI107817.1|CI107817
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956117|gb|BE229921.1|BE229921
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956253|gb|BE230057.1|BE230057
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|9864969|gb|AU100719.1|AU100719
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86251598|gb|CI016887.1|CI016887
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88850040|gb|CI091335.1|CI091335
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88956613|gb|CI092817.1|CI092817
EST:     CTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCCAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: CTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|42592116|gb|CK738602.1|CK738602
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86884733|gb|CI313112.1|CI313112
EST:     CTGAAAGA-TACAACCAAGCTGAGAAGCTTTCCACCAA-                         GTTCTGGAACTTGACAGCCAAAATGTCAATGCTTTATACAGGAGGGCCCAA
genomic: CTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|3767320|gb|AU031430.1|AU031430
EST:     GCAAGCTGANGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89179973|gb|CI044252.1|CI044252
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88964928|gb|CI097796.1|CI097796
EST:     GCATGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86431722|gb|CI085333.1|CI085333
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89193937|gb|CI018255.1|CI018255
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89186021|gb|CI047890.1|CI047890
EST:     TGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCCAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: TGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88265212|gb|CI368986.1|CI368986
EST:     AGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88955694|gb|CI091983.1|CI091983
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88907973|gb|CI090569.1|CI090569
EST:     AGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29615642|gb|CB620654.1|CB620654
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|3760324|gb|C97578.1|C97578
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCNCCAAG                         GTTCTGGAACTTGACAGCCAAAATNTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86485797|gb|CI128430.1|CI128430
EST:     CAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: CAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88964214|gb|CI045407.1|CI045407
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCCAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86433146|gb|CI093489.1|CI093489
EST:     AAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88902953|gb|CI088491.1|CI088491
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88906044|gb|CI089630.1|CI089630
EST:     AGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956257|gb|BE230061.1|BE230061
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88964707|gb|CI070053.1|CI070053
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88849726|gb|CI089832.1|CI089832
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|10794585|gb|AU108551.1|AU108551
EST:     CAAGCTGAAGCTGAAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGNCAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: CAAGCTGAAGCTG-AAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86854433|gb|CI256555.1|CI256555
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956727|gb|BE230530.1|BE230530
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86484224|gb|CI126857.1|CI126857
EST:     AGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29628611|gb|CB633622.1|CB633622
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88902497|gb|CI088035.1|CI088035
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCTAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|58599011|gb|CK009539.1|CK009539
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88983060|gb|CI250664.1|CI250664
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86427975|gb|CI073072.1|CI073072
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88243528|gb|CI243925.1|CI243925
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29675036|gb|CB671311.1|CB671311
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86837933|gb|CI343280.1|CI343280
EST:     CTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: CTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|58604776|gb|CK015304.1|CK015304
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88903094|gb|CI088632.1|CI088632
EST:     AAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: AAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|58695816|gb|CK084503.1|CK084503
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGG
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGG
EST: gi|66923788|gb|CX110636.1|CX110636
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|218497051|gb|FG946048.1|FG946048
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8527773|gb|AU092588.1|AU092588
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88903089|gb|CI088627.1|CI088627
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACCTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89176179|gb|CI043200.1|CI043200
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|163929135|gb|EG712660.1|EG712660
EST:     CTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: CTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29630490|gb|CB635499.1|CB635499
EST:     GCAAGCTGAAGCTGAAAGATTCCAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|86592330|gb|CI250984.1|CI250984
EST:     GCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCTAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956562|gb|BE230477.1|BE230477
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAN
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|8956166|gb|BE229970.1|BE229970
EST:     GCAAGCTGAATCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88961920|gb|CI097073.1|CI097073
EST:     TGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: TGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|88957731|gb|CI095505.1|CI095505
EST:     GAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29666722|gb|CB662997.1|CB662997
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89184415|gb|CI046980.1|CI046980
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29624444|gb|CB629455.1|CB629455
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89192306|gb|CI049767.1|CI049767
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|89179813|gb|CI044092.1|CI044092
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
EST: gi|29675020|gb|CB671295.1|CB671295
EST:     GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAG                         GTTCTGGAACTTGCCAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA
genomic: GCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcag ... ttgttgccagGTTCTGGAACTTGACAGCCAAAATGTCAAGGCTTTATACAGGAGGGCCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAACAATCCAAGCAACTGAAGGTTACCTGCAACTTGAACAATGCTGCCTGCAAGCTGAAGCTGAAAGATTACAAGCAAGCTGAGAAGCTTTGCACCAAGgtacattcagttcttcctgcaaaagacccatttgttatgtgttttggtaaaccaaggtaacattctggtgtttgttgccag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC