1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATCTAATAGATGGTTTTGATCAAGAGGCAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactcccttatactcttaaattattgtaatacttaatgcacacatgacatactgttttgctattttgtggagatggaatattgtaccatcaaaatatgt...
species | Oryza sativa |
transcript | LOC_Os08g36994.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACEST: gi|29622673|gb|CB627684.1|CB627684
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGAC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCEST: gi|58656399|gb|CK045079.1|CK045079
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGCEST: gi|396941631|gb|HO188288.1|HO188288
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
EST: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAG GCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
genomic: CAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactccctt ... ttcctttcagGCTGATTTTGACCCAATAAGATGGCTTGATCGAGCATTAATTAGTATGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTAATAGATGGTTTTGATCAAGAGGCAGCTGCTGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGgtactcccttatactcttaaattattgtaatacttaatgcacacatgacatactgttttgctattttgtggagatggaatattgtaccatcaaaatatgt
- - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA