1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAAgtatggtcttctagaatatatatgttattttcaacactccctccatcccaaaataagtgcaaccctctagttcaaatttgaactacaaggctgcacttattttgggacggagggagtatgtaccatgaatgtacttttttaatctttttctgcaaatctttgtag
species | Oryza sativa |
transcript | LOC_Os08g23810.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAA GTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATEST: gi|88672973|gb|CI727088.1|CI727088
genomic: ATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAAgtatggtctt ... atctttgtagGTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCAT
EST: TTGAGAGTGACACAAAA GTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATAEST: gi|29613729|gb|CB618742.1|CB618742
genomic: TTGAGAGTGACACAAAAgtatggtctt ... atctttgtagGTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATA
EST: ATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAA GTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATA
genomic: ATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAAgtatggtctt ... atctttgtagGTACTTGCTTTTGAAGCTGGAAGGAAAGGGAAAATCAGAGTTAACACCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGGTGGTGGCATGAGTTCAGCTAAAGCAGCTCTTGAGAGTGACACAAAAgtatggtcttctagaatatatatgttattttcaacactccctccatcccaaaataagtgcaaccctctagttcaaatttgaactacaaggctgcacttattttgggacggagggagtatgtaccatgaatgtacttttttaatctttttctgcaaatctttgtag
- TGGTGG
- - - TGGTGG
- - - - - - - - - TCAGCT
- - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - CAGCTC