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TGAGTATAACCACATTTAAGGACAACTGGGGCTCAGAATATCAACGCACAAACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttttaccttctctagaaatataaataacttgtcattttatggaaattttatgaggaaagtaagcattacccagtatatgaagcaccacaaaat...
species | Oryza sativa |
transcript | LOC_Os08g23440.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTC-A ---------A-GCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTCEST: gi|58690193|gb|CK078880.1|CK078880
genomic: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttt ... gacttttcagTGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTC
EST: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAA TGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTCEST: gi|5002740|gb|AU067849.1|AU067849
genomic: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttt ... gacttttcagTGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTC
EST: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAA TGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTCEST: gi|58693751|gb|CK082438.1|CK082438
genomic: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttt ... gacttttcagTGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTC
EST: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAA TGCTTCGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTC
genomic: AACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttt ... gacttttcagTGCTTTGGTAGGCCTCTTTTTCCCAGCAGTGACTGGAATTATGGCTGGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGTATAACCACATTTAAGGACAACTGGGGCTCAGAATATCAACGCACAAACAATGCTGGAGTTCCTGATCCAAATGGCTCCATATATTGGGATTTCAAgtaagttttttaccttctctagaaatataaataacttgtcattttatggaaattttatgaggaaagtaagcattacccagtatatgaagcaccacaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttctct