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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTCCGAGAGAGCTCCTCAAGACAGTGAGCTCTCTGATGCCAAATTTGCCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatatttgcctctgctacatgaacaaaataatttgttgatttggtggactaacatgatgctgtggattatcctcag

Basic information

species Oryza sativa
transcript LOC_Os08g10570.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g10570.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G368902_T01 (Zea mays), 5'ss of exon 10
AGTGTCCGAGAGAGCTCCTCAAGACAGTGAGCTCTCTGATGCCAAATTTGCCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagt--atatttgcctctgctacatgaacaaaataatttgttgatttggtggactaa-catgatgctgtggattatcctcag----------------------------
 ||||||||||| |||||  | | | |||||||||| || ||||| || || || || || || |||||||| ||||| |||||||||||||| ||||||||| ||    |  ||   |  ||  ||||       | ||      ||||||  |   | | |    |||||  |  |  |                               
CGTGTCCGAGAGGGCTCCCGACGCCCGTGAGCTCTCGGACGCCAAGTTCGCGTGCCTCTGCGTCAAGCACGTGAAGAGCAACGCCATTGTGATCGCCAAGgtcggtcagcacgtgttacctcttgatgatttgt-cagttatacagtttggtttatcgatcctctctctgtgtgtcctgatggaatgtacggctggcctggtctccctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87020611|gb|CI267332.1|CI267332
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|86506616|gb|CI149249.1|CI149249
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|32948504|gb|BP185076.1|BP185076
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|89194604|gb|CI117041.1|CI117041
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|18386202|gb|BM419401.1|BM419401
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCC-AACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|55409415|gb|CV721791.1|CV721791
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|18386348|gb|BM419546.1|BM419546
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
EST: gi|86493028|gb|CI135661.1|CI135661
EST:     CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAG                         AATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT
genomic: CCTGGCTTTGTGTAAAGCACGTAAAGAGTAACGCCATTGTGATAGCCAAGgtcagtatat ... ttatcctcagAATAACTGCATGTTAGGCATGGGAAGTGGCCAGCCAAACAGACTGGAGAGT