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AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaatcattgcttgtagaagttcttcattttgctttatacactagttcattgatgatgtttgttttattatttgttctaacatgccccccttgg...
species | Oryza sativa |
transcript | LOC_Os08g01180.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|58595441|gb|CK005969.1|CK005969
genomic: TGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|3760363|gb|C97617.1|C97617
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: TGCTGATTCAGTAATTAGAACTGTCAGATTAGTTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|218494749|gb|FG957718.1|FG957718
genomic: TGCTGAGTCAGTAATTAGAACTGTCAGATTAG-TTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|38476686|gb|CF960819.1|CF960819
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGTGGAGAACEST: gi|88262193|gb|CI365769.1|CI365769
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACEST: gi|86854626|gb|CI258919.1|CI258919
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGAC
EST: TGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|29627355|gb|CB632366.1|CB632366
genomic: TGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: TGCTGAGTCAGTAATTTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|29613550|gb|CB618563.1|CB618563
genomic: TGCTGAGTCAGTAA-TTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAACEST: gi|58606681|gb|CK034714.1|CK034714
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCG AGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGTGGAGAACEST: gi|86887659|gb|CI311942.1|CI311942
genomic: ATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
EST: TGCTGAGTCAGTAATTAAGAACTGTCAGATTAGTTTTTGAAAGTCTTGCG AGACACATNTATGGATTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
genomic: TGCTGAGTCAGTAATT-AGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaa ... ccatttacagAGACACATCTATGGACTAAAAGGAAAGAATATTGATGTTTTTGCGGAGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATCAGCAGATGCTGAGTCAGTAATTAGAACTGTCAGATTAGTTTCTGAAAGTCTTGCGgtaagctaaatcattgcttgtagaagttcttcattttgctttatacactagttcattgatgatgtttgttttattatttgttctaacatgccccccttgg
- - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct