1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccctgcttgttcatattctgtcaatgggaatatggaaactgaaactaaaagggtgacctacttgcatgttgtacaaatggctttttttatcag...
species | Oryza sativa |
transcript | LOC_Os07g37740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|3761419|gb|C98667.1|C98667
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: TTTCTGCTGTGGCNCCCCCTGTTG-CCTCGAGGGGAAATCATTGGC GGGGATTTTACCAAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|88970336|gb|CI383838.1|CI383838
genomic: TTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACC-AGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|87030942|gb|CI268093.1|CI268093
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCCATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|88225839|gb|CI225755.1|CI225755
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|66923956|gb|CX110804.1|CX110804
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTGCCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|86429939|gb|CI082362.1|CI082362
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGG-AATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|87027955|gb|CI276311.1|CI276311
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|58683369|gb|CK072056.1|CK072056
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|88969834|gb|CI383336.1|CI383336
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: CGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|88966183|gb|CI013059.1|CI013059
genomic: CGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGGEST: gi|88834932|gb|CI370235.1|CI370235
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
EST: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGC GGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
genomic: GTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccc ... actcccgcagGGGGATTTTACCAGCAATTGATCTCATCAGCAAGAATGCTTTGGTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCATATTCTTTTCTGTGTATTTTCTGCTGTGGCTCCTCCTGTTGTCTTCGAGGGGAAATCATTGGCgtaagttccctgcttgttcatattctgtcaatgggaatatggaaactgaaactaaaagggtgacctacttgcatgttgtacaaatggctttttttatcag
- - - - - - - - - - - - - - - - - CTCCTC