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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGTTGGAAAGAAGGTTTGTTATGTGCAATTCCCTCAAAGGTTTGATGGGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatttgccccatatttctgagatactctcctacacaagttatttaattttcttgcagtttatctaacatttgcttgttacag

Basic information

species Oryza sativa
transcript LOC_Os07g24190.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G025231_T01 (Zea mays), 5'ss of exon 10
TTTGGTTGGAAAGAAGGTTTGTTATGTGCAATTCCCTCAAAGGTTTGATGGGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatttgcc--ccatatttctgagatactctcctacacaagttatttaattttc--ttgcagtttatctaacatttgcttgttacag
|||  | |||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||||| || ||| |||| || ||||| || ||||||||||||  |   |||||||||||| |  |||  |    |   ||| || |  |   |    ||||  ||||||||||  |  | |||
TTTACTAGGAAAGAAGGTTTGCTATGTACAGTTCCCTCAAAGATTTGATGGGATTGATCGCCATGACCGATATGCTAACCGGAATGTTGTCTTTTTTGATgtaagatttagcattcatatttctgaggtgttctgttgtctataatatgtattccttggtgaatgttttactaacatttgtgttgtgcag

upper sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G028353_T02 (Zea mays), 5'ss of exon 10
TTTGGTTGGAAAGAAGGTTTGTTATGTGCAATTCCCTCAAAGGTTTGATGGGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatttgcc--ccatatttctgagatactctcctacacaagttatttaattttcttgcag----tttatctaacatttgcttgttacag
  |  | |||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||||| || |||||||| || ||||| |||||||||||||||| |   ||||||||||||||  |||  |    |  |||| || ||||||||  |    |||  ||||||||||     | |||
ACTACTAGGAAAGAAGGTTTGCTATGTACAGTTCCCTCAAAGATTTGATGGGATTGATCGCCATGACCGATATGCTAACAGGAATGTTGTCTTTTTCGATgtaagatttgacattcatatttctgagatgttctgttgtctacattatgtatttttcttggtgaatgttttactaacatttgtgctgtgcag

upper sequence: LOC_Os07g24190.2 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv03s0038g04250.t01 (Vitis vinifera), 5'ss of exon 10
TTTGGTTGGAAAGAAGGTTTGTTATGTGCAATTCCCTCAAAGGTTTGATGGGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatt----tgccccatatttctgagatactctcctacacaagttatttaattttcttgcagtttatctaaca--tttgcttgttacag
  || | |||||||| || || ||||| || ||||| || |||||||||||||||||| | ||||||||||| || ||| ||||| | || ||||| ||||||||  |    | | |||||| |    ||| ||    |  | |  |||     ||||||  |  || |  |      |||   ||    ||
ACTGCTGGGAAAGAAAGTGTGCTATGTTCAGTTCCCACAGAGGTTTGATGGGATTGATAGGCATGATCGATATGCTAACCGGAACATTGTATTCTTTGATgtaagcctgcagttctccatatctt---gatgctagttttgatagtttaga-gcttttctatcgattgacttggtcattttatatgcactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29632757|gb|CB637766.1|CB637766
EST:     ACGTGGTCTTCTTCCAT                         ATCAACATGAAAGGCTTGGATGGTATCCAAGGCCCCATCTATGTTGGTACT
genomic: ACGTGGTCTTCTTCGATgtaagatttg ... cttgttacagATCAACATGAAAGGCTTGGATGGTATCCAAGGCCCCATCTATGTTGGTACT
EST: gi|29674793|gb|CB671068.1|CB671068
EST:     GGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGAT                         ATCAACATGAAAGGCTTGGATGGTATCCAAGGCCCCATCTATGTTGGTACT
genomic: GGATTGATCGTCATGATCGATACGCCAACAGGAACGTGGTCTTCTTCGATgtaagatttg ... cttgttacagATCAACATGAAAGGCTTGGATGGTATCCAAGGCCCCATCTATGTTGGTACT