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CATTTGACAACATCTACAAGTTAGATGGTGTTCCTGTAGTCACAGTACAGCTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccagtctcccctccccagttagcccaatatttttatcaatgcccgtgatgcacacattatattttttcataaagagtgcatttgtttgtactgaacaatggccgtacaaatgcagtctgcttttttgcatgatgctgaatgatacctctgtttatctttgatgtag
species | Oryza sativa |
transcript | LOC_Os07g10490.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|300215694|gb|HO088320.1|HO088320
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|29629811|gb|CB634820.1|CB634820
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|29675444|gb|CB671719.1|CB671719
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTT-GAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|58685253|gb|CK073940.1|CK073940
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|29675446|gb|CB671721.1|CB671721
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTTGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|4714783|gb|AU055900.1|AU055900
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|8956710|gb|BE230513.1|BE230513
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGCEST: gi|29679863|gb|CB676138.1|CB676138
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
EST: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAG ACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
genomic: CTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccag ... tttgatgtagACAACTGAAAAAGGCAGTTGGCTTGGATAATCTTCTCTACACTCCAGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTGACAACATCTACAAGTTAGATGGTGTTCCTGTAGTCACAGTACAGCTTCGTTATAATGGATGGGTTACAGAACTTCAAGATTTGGAGAAATCAAGgtaactccagtctcccctccccagttagcccaatatttttatcaatgcccgtgatgcacacattatattttttcataaagagtgcatttgtttgtactgaacaatggccgtacaaatgcagtctgcttttttgcatgatgctgaatgatacctctgtttatctttgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA