1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttttgacataagcacttatttactaatctgatttaatccatatgcttgtgagctcgagttaatgtgcctaattactccattccttgtttttgccttgtag
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|25803804|gb|CA759765.1|CA759765
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|58593226|gb|CF991534.1|CF991534
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|86869572|gb|CI346432.1|CI346432
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GGAGTTGCACCAG ATATTCATGGATATGCCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|88466365|gb|CI529774.1|CI529774
genomic: GGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: AGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|58596499|gb|CK007027.1|CK007027
genomic: AGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|88468042|gb|CI517501.1|CI517501
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|88964544|gb|CI069892.1|CI069892
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|86593575|gb|CI264454.1|CI264454
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAACEST: gi|88297117|gb|CI545207.1|CI545207
genomic: GTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
EST: ACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAG ATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
genomic: ACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttt ... tgccttgtagATATTCATGGATATGGCAGTTTTGGTTGATGCTCAAGGAGACATGATCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgacttttttgacataagcacttatttactaatctgatttaatccatatgcttgtgagctcgagttaatgtgcctaattactccattccttgtttttgccttgtag
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA