1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTACAACTCTAACAAGTCAAACCTTAAGTTGTATGTTAGAAGGGTTTTCATCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagattactatttcatgaacgacacggtattccattcattgacttatgcagcctaaacctataagctattatctgtag
species | Oryza sativa |
transcript | LOC_Os06g50300.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|88964250|gb|CI045443.1|CI045443
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|86902578|gb|CI304397.1|CI304397
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|33800491|gb|CF326115.1|CF326115
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|10611619|gb|AU108385.1|AU108385
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|58685726|gb|CK074413.1|CK074413
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|58689260|gb|CK077947.1|CK077947
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|15008597|gb|AU222985.1|AU222985
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATNTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTNTCAATGTATCACGAGAAATGNTCEST: gi|29627895|gb|CB632906.1|CB632906
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|14192100|gb|AU184311.1|AU184311
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|55410371|gb|CV722747.1|CV722747
genomic: TGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTCEST: gi|29659228|gb|CB655503.1|CB655503
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
EST: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAG GGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
genomic: TCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagatt ... ttatctgtagGGTCTCGTCGACTCGGACACATTGCCTCTCAATGTATCACGAGAAATGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAACTCTAACAAGTCAAACCTTAAGTTGTATGTTAGAAGGGTTTTCATCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagattactatttcatgaacgacacggtattccattcattgacttatgcagcctaaacctataagctattatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG