1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGAGGCTTTCTTTGATGCTTTACAACAGAATGGCGCTAAAGCAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctattgttacattagtggttattggatatgggttgctttgtttagacattttattctttttggcttttatggtacttttctttcttctagatata...
species | Oryza sativa |
transcript | LOC_Os06g49440.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTGEST: gi|88228411|gb|CI227891.1|CI227891
genomic: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTG
EST: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTGEST: gi|58602901|gb|CK013429.1|CK013429
genomic: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTG
EST: GATCTGTACTGTGTATGATGCGAAAGACGCATACTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGAEST: gi|29676721|gb|CB672996.1|CB672996
genomic: GATCTGTTCT-TGTATGATG-GAAAGACGCATACTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGA
EST: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTGEST: gi|88906107|gb|CI375179.1|CI375179
genomic: CAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTG
EST: CTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGGCTCGAAGAAATTGTTACTTTEST: gi|86838519|gb|CI329044.1|CI329044
genomic: CTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTG-CTCGAAGAGATTGTTACTGT
EST: GATGGAAAGACGCATACTGACTTGTTCCTTCAG GATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTG
genomic: GATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctatt ... tgtgctgtagGATCCTCTCCGGGGTGGTAGGGATAAGCTGCTCGAAGAGATTGTTACTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGGCTTTCTTTGATGCTTTACAACAGAATGGCGCTAAAGCAGATCTGTTCTTGTATGATGGAAAGACGCATACTGACTTGTTCCTTCAGgtaatctattgttacattagtggttattggatatgggttgctttgtttagacattttattctttttggcttttatggtacttttctttcttctagatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA