1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAGTTTGTGAGAATTATTCGCCTCCCGAAGGATTTAAGGAAAAAGATTTATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcacaaaactcaaaatgccatttgtgaaatgccaacccaacacatgatacaggatgcctcattcaattttgtcatgtgcag
species | Oryza sativa |
transcript | LOC_Os06g49140.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCEST: gi|218503483|gb|FG956523.1|FG956523
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCEST: gi|218502657|gb|FG948620.1|FG948620
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCEST: gi|38477003|gb|CF961136.1|CF961136
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCEST: gi|27547118|gb|CA765118.2|CA765118
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTCEST: gi|27920673|gb|CB096481.1|CB096481
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
EST: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAG ACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
genomic: ATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcac ... tcatgtgcagACTGCAGAAGTGGATGGTTAGAGGGACCAAACAAGGTCTACATCCCATTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTTTGTGAGAATTATTCGCCTCCCGAAGGATTTAAGGAAAAAGATTTATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGgtaatggcacaaaactcaaaatgccatttgtgaaatgccaacccaacacatgatacaggatgcctcattcaattttgtcatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT