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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTACGATCCCCGTTTGACAGGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttatcgggctaatcagttctgccttttcagcccctttttctttattgtttccaatccctgcccttttcttaactgtttccaacttccctgaaaa...

Basic information

species Oryza sativa
transcript LOC_Os06g49110.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g49110.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv18s0001g02550.t01 (Vitis vinifera), 5'ss of exon 11
AAGTACGATCCCCGTTTGACAGGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttatcgggctaatcagtt-ctgccttttcagcccctttttctttattgtttccaatccctgcccttttcttaactg-tttccaacttccctgaaaa
                      || ||||||||  |||| ||||||||||||||  | || ||| |||| || ||  |||||||||| |||||||||||||||| || || |  ||| |   || |     |   |    | |    | | |  | |||      |   |  |  ||||    ||| |||   |  |   | 
----------------------GTGAAACCTGGTCTGCCTTACTTGGATGTCATAAGGCTGCTTCGGGATAACTCGTCATTGCCAATTGCTGCATATCAGgttctttaattg--ctacttgatttccaatatcatattatcctaccttatgtcatatccttagaatagtccctaattaatgaatttgcaaggccatttccac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86870512|gb|CI320608.1|CI320608
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88971045|gb|CI387106.1|CI387106
EST:     TTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88961091|gb|CI096494.1|CI096494
EST:     GCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: GCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86887360|gb|CI313263.1|CI313263
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86869618|gb|CI322104.1|CI322104
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGAT
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCA-Ggttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGAT
EST: gi|86482891|gb|CI125524.1|CI125524
EST:     ATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: ATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|89178910|gb|CI391908.1|CI391908
EST:     TTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88251932|gb|CI349169.1|CI349169
EST:     ACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: ACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86842125|gb|CI338471.1|CI338471
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTCCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|87030788|gb|CI362002.1|CI362002
EST:     TCAGCA-TGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86836906|gb|CI347481.1|CI347481
EST:     TCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86841162|gb|CI342914.1|CI342914
EST:     CATCCCTCTTCTTAGGCACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: CATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88294931|gb|CI522885.1|CI522885
EST:     TCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|44669277|gb|CR282711.1|CR282711
EST:     CCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: CCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88991676|gb|CI019854.1|CI019854
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88524087|gb|CI451973.1|CI451973
EST:     AATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: AATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88437833|gb|CI533790.1|CI533790
EST:     CCAATCNCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGGTGGAGGAGCACTGAACATGATC
genomic: CCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88251358|gb|CI349786.1|CI349786
EST:     CGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: CGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88956575|gb|CI092792.1|CI092792
EST:     TCATCCGTCTTCTNAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86874617|gb|CI318176.1|CI318176
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCA-TGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88245599|gb|CI245448.1|CI245448
EST:     TCATCCGTCTTCTTAGGGACTATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGGACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|8858787|gb|AU096105.1|AU096105
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|29684916|gb|CB681191.1|CB681191
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88264552|gb|CI368326.1|CI368326
EST:     TCATCCGTCTTCTTA-GGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|86484400|gb|CI127033.1|CI127033
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88906969|gb|CI376041.1|CI376041
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTCCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88971764|gb|CI389001.1|CI389001
EST:     TCAGCATTCCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAACACTGAACATGATC
genomic: TCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|88956530|gb|CI092762.1|CI092762
EST:     TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|15856703|gb|BI809515.1|BI809515
EST:     ACAATTCAGCATT-CCAATC-CTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGA-CACCTGAACATGAT
genomic: ACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCA-CTGAACATGAT
EST: gi|86884778|gb|CI314354.1|CI314354
EST:     TCATCC-TCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTG-ACATGATC
genomic: TCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC
EST: gi|89175231|gb|CI111750.1|CI111750
EST:     CTGCATATCAG                         GTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGC-CTGAACATGATC
genomic: CTGCATATCAGgttcgtttat ... aatcatccagGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATC